Genome Meta Information: Porphyromonas gingivalis KCOM 3131 (GCA_002753935.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002753935.1 | ||
| HOMD Taxon-ID | HMT-0619 | ||
| Species Name (in use by HOMD) | Porphyromonas gingivalis | ||
| Organism Name (as deposited) | HMT-619 Porphyromonas gingivalis KCOM 3131 | ||
| Strain or Isolate | KCOM 3131 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas; s__Porphyromonas gingivalis |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 167.1 | ||
| Contigs |
|
||
| Total Sequence Length | 2,359,159 (bp) | ||
| GC Percentage | 48.22 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/753/935/GCA_002753935.1_ASM275393v1 | ||
| CDS | 1982 | ||
| Genes | 2058 | ||
| mRNA | 2058 | ||
| misc RNA | 10 | ||
| rRNA | 12 | ||
| tRNA | 53 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.68 % | ||
| CheckM Completeness | 98.62 % | ||
| CheckM Contamination | 0.96 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM275393v1 |
| GenBank Assembly Accession | GCA_002753935.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002753935.1 [NCBI] |
| BioSample | SAMN07840095 [NCBI] |
| BioProject | PRJNA416024 [NCBI] |
| Submitter | Korean Collection for Oral Microbiology |
| Submission Date | 2017-10-26T23:16:04.573 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 837 |
| Isolation Source | Subgingival dental plaque |
| Geo Location | Korea: Gwangju |
