Genome Meta Information: Bifidobacterium breve NRBB49 (GCA_002838685.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002838685.1 | ||
| HOMD Taxon-ID | HMT-0889 | ||
| Species Name (in use by HOMD) | Bifidobacterium breve | ||
| Organism Name (as deposited) | HMT-889 Bifidobacterium breve NRBB49 | ||
| Strain or Isolate | NRBB49 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium; s__Bifidobacterium breve |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 346 | ||
| Contigs |
|
||
| Total Sequence Length | 2,289,791 (bp) | ||
| GC Percentage | 58.59 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/838/685/GCA_002838685.1_ASM283868v1 | ||
| CDS | 1917 | ||
| Genes | 1989 | ||
| mRNA | 1989 | ||
| misc RNA | 12 | ||
| rRNA | 4 | ||
| tRNA | 55 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.01 % | ||
| CheckM Completeness | 97.88 % | ||
| CheckM Contamination | 1.14 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM283868v1 |
| GenBank Assembly Accession | GCA_002838685.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002838685.1 [NCBI] |
| BioSample | SAMN07160977 [NCBI] |
| BioProject | PRJNA387696 [NCBI] |
| Submitter | University College Cork |
| Submission Date | 2017-05-24T08:43:02.340 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1685 |
| Isolation Source | |
| Geo Location | Netherlands |
