Genome Meta Information: Schaalia odontolytica UMB0018 (GCA_002847525.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002847525.1 | ||
| HOMD Taxon-ID | HMT-0701 | ||
| Species Name (in use by HOMD) | Schaalia odontolytica | ||
| Organism Name (as deposited) | HMT-701 Schaalia odontolytica UMB0018 | ||
| Strain or Isolate | UMB0018 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia; s__Pauljensenia odontolytica_B |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 159.68 | ||
| Contigs |
|
||
| Total Sequence Length | 2,341,511 (bp) | ||
| GC Percentage | 65.49 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/847/525/GCA_002847525.1_ASM284752v1 | ||
| CDS | 1930 | ||
| Genes | 1993 | ||
| mRNA | 1993 | ||
| misc RNA | 9 | ||
| rRNA | 4 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 88.07 % | ||
| CheckM Completeness | 94.01 % | ||
| CheckM Contamination | 3.5 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM284752v1 |
| GenBank Assembly Accession | GCA_002847525.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002847525.1 [NCBI] |
| BioSample | SAMN08193632 [NCBI] |
| BioProject | PRJNA316969 [NCBI] |
| Submitter | Loyola University Chicago |
| Submission Date | 2017-12-16T21:05:04.516 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | PKKM01 |
| NCBI TaxID | 1660 |
| Isolation Source | |
| Geo Location | USA: Maywood, IL |
