Genome Meta Information: Neisseria perflava UMB0210 (GCA_002847985.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002847985.1 | ||
| HOMD Taxon-ID | HMT-0101 | ||
| Species Name (in use by HOMD) | Neisseria perflava | ||
| Organism Name (as deposited) | HMT-101 Neisseria perflava UMB0210 | ||
| Strain or Isolate | UMB0210 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria; s__Neisseria perflava_A |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 138.48 | ||
| Contigs |
|
||
| Total Sequence Length | 2,311,158 (bp) | ||
| GC Percentage | 48.84 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/847/985/GCA_002847985.1_ASM284798v1 | ||
| CDS | 2141 | ||
| Genes | 2211 | ||
| mRNA | 2211 | ||
| misc RNA | 17 | ||
| rRNA | 3 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 95.71 % | ||
| CheckM Completeness | 99.43 % | ||
| CheckM Contamination | 0.6 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 3 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM284798v1 |
| GenBank Assembly Accession | GCA_002847985.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002847985.1 [NCBI] |
| BioSample | SAMN08193709 [NCBI] |
| BioProject | PRJNA316969 [NCBI] |
| Submitter | Loyola University Chicago |
| Submission Date | 2017-12-16T21:05:05.849 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | PKJP01 |
| NCBI TaxID | 33053 |
| Isolation Source | |
| Geo Location | USA: Maywood, IL |
