Genome Meta Information: Lacticaseibacillus rhamnosus NRRL B-442 (GCA_002849515.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002849515.1 | ||
| HOMD Taxon-ID | HMT-0749 | ||
| Species Name (in use by HOMD) | Lacticaseibacillus rhamnosus | ||
| Organism Name (as deposited) | HMT-749 Lacticaseibacillus rhamnosus NRRL B-442 | ||
| Strain or Isolate | NRRL B-442 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus; s__Lacticaseibacillus rhamnosus |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 26 | ||
| Contigs |
|
||
| Total Sequence Length | 2,974,909 (bp) | ||
| GC Percentage | 46.72 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/849/515/GCA_002849515.1_ASM284951v1 | ||
| CDS | 2758 | ||
| Genes | 2857 | ||
| mRNA | 2857 | ||
| misc RNA | 33 | ||
| rRNA | 6 | ||
| tRNA | 59 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 99.05 % | ||
| CheckM Contamination | 1.16 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM284951v1 |
| GenBank Assembly Accession | GCA_002849515.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002849515.1 [NCBI] |
| BioSample | SAMN08239957 [NCBI] |
| BioProject | PRJNA427569 [NCBI] |
| Submitter | University of Connecticut |
| Submission Date | 2017-12-26T11:39:03.073 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | PKQF01 |
| NCBI TaxID | 47715 |
| Isolation Source | missing |
| Geo Location | USA |
