Genome Meta Information: Prevotella jejuni CD3:33 (GCA_002849795.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002849795.1 | ||
| HOMD Taxon-ID | HMT-0313 | ||
| Species Name (in use by HOMD) | Prevotella jejuni | ||
| Organism Name (as deposited) | HMT-313 Prevotella jejuni CD3 | ||
| Strain or Isolate | CD3:33 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella; s__Prevotella jejuni |
||
| Sequencing Technology | 454; Sanger | ||
| Genome Coverage | 48 | ||
| Contigs |
|
||
| Total Sequence Length | 3,913,006 (bp) | ||
| GC Percentage | 41.75 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/849/795/GCA_002849795.1_ASM284979v1 | ||
| CDS | 3166 | ||
| Genes | 3237 | ||
| mRNA | 3237 | ||
| misc RNA | 8 | ||
| rRNA | 12 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.91 % | ||
| CheckM Completeness | 99.11 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM284979v1 |
| GenBank Assembly Accession | GCA_002849795.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002849795.1 [NCBI] |
| BioSample | SAMN07770260 [NCBI] |
| BioProject | PRJNA413878 [NCBI] |
| Submitter | Umea university |
| Submission Date | 2017-10-11T07:39:03.033 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1177574 |
| Isolation Source | biopsy of small intestine from child with celiac disease |
| Geo Location | Sweden: Umea |
