Genome Meta Information: Staphylococcus epidermidis DAR1907 (GCA_002850315.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002850315.1 | ||
| HOMD Taxon-ID | HMT-0601 | ||
| Species Name (in use by HOMD) | Staphylococcus epidermidis | ||
| Organism Name (as deposited) | HMT-601 Staphylococcus epidermidis DAR1907 | ||
| Strain or Isolate | DAR1907 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus epidermidis |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 203.59 | ||
| Contigs |
|
||
| Total Sequence Length | 2,727,549 (bp) | ||
| GC Percentage | 32.09 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/850/315/GCA_002850315.1_ASM285031v1 | ||
| CDS | 2574 | ||
| Genes | 2736 | ||
| mRNA | 2736 | ||
| misc RNA | 82 | ||
| rRNA | 19 | ||
| tRNA | 60 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.54 % | ||
| CheckM Completeness | 99.69 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM285031v1 |
| GenBank Assembly Accession | GCA_002850315.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002850315.1 [NCBI] |
| BioSample | SAMN07444319 [NCBI] |
| BioProject | PRJNA308322 [NCBI] |
| Submitter | University of Mississippi Medical Center |
| Submission Date | 2017-08-02T17:28:04.293 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1282 |
| Isolation Source | blood |
| Geo Location | USA: New York |
