Genome Meta Information: Rothia mucilaginosa UMB0024 (GCA_002861015.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002861015.1 | ||
| HOMD Taxon-ID | HMT-0681 | ||
| Species Name (in use by HOMD) | Rothia mucilaginosa | ||
| Organism Name (as deposited) | HMT-681 Rothia mucilaginosa clade-681 UMB0024 | ||
| Strain or Isolate | UMB0024 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia; s__Rothia mucilaginosa |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 366.05 | ||
| Contigs |
|
||
| Total Sequence Length | 2,258,154 (bp) | ||
| GC Percentage | 59.55 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/861/015/GCA_002861015.1_ASM286101v1 | ||
| CDS | 1739 | ||
| Genes | 1808 | ||
| mRNA | 1808 | ||
| misc RNA | 13 | ||
| rRNA | 6 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 95.63 % | ||
| CheckM Completeness | 99.06 % | ||
| CheckM Contamination | 0.81 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM286101v1 |
| GenBank Assembly Accession | GCA_002861015.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002861015.1 [NCBI] |
| BioSample | SAMN08193715 [NCBI] |
| BioProject | PRJNA316969 [NCBI] |
| Submitter | Loyola University Chicago |
| Submission Date | 2017-12-16T21:05:05.938 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | PKIQ01 |
| NCBI TaxID | 43675 |
| Isolation Source | |
| Geo Location | USA: Maywood, IL |
