Genome Meta Information: Rothia dentocariosa UMB0083 (GCA_002861025.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002861025.1 | ||
| HOMD Taxon-ID | HMT-0587 | ||
| Species Name (in use by HOMD) | Rothia dentocariosa | ||
| Organism Name (as deposited) | HMT-587 Rothia dentocariosa UMB0083 | ||
| Strain or Isolate | UMB0083 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia; s__Rothia dentocariosa |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 331.36 | ||
| Contigs |
|
||
| Total Sequence Length | 2,494,324 (bp) | ||
| GC Percentage | 53.75 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/861/025/GCA_002861025.1_ASM286102v1 | ||
| CDS | 2133 | ||
| Genes | 2200 | ||
| mRNA | 2200 | ||
| misc RNA | 12 | ||
| rRNA | 5 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.42 % | ||
| CheckM Completeness | 96.3 % | ||
| CheckM Contamination | 1.47 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM286102v1 |
| GenBank Assembly Accession | GCA_002861025.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002861025.1 [NCBI] |
| BioSample | SAMN08193714 [NCBI] |
| BioProject | PRJNA316969 [NCBI] |
| Submitter | Loyola University Chicago |
| Submission Date | 2017-12-16T21:05:05.923 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | PKIR01 |
| NCBI TaxID | 2047 |
| Isolation Source | |
| Geo Location | USA: Maywood, IL |
