Genome Meta Information: Alloscardovia omnicolens UMB0006 (GCA_002861485.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002861485.1 | ||
| HOMD Taxon-ID | HMT-0198 | ||
| Species Name (in use by HOMD) | Alloscardovia omnicolens | ||
| Organism Name (as deposited) | HMT-198 Alloscardovia omnicolens UMB0006 | ||
| Strain or Isolate | UMB0006 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Alloscardovia; s__Alloscardovia omnicolens |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 363.85 | ||
| Contigs |
|
||
| Total Sequence Length | 1,802,081 (bp) | ||
| GC Percentage | 46.8 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/861/485/GCA_002861485.1_ASM286148v1 | ||
| CDS | 1497 | ||
| Genes | 1556 | ||
| mRNA | 1556 | ||
| misc RNA | 10 | ||
| rRNA | 2 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.75 % | ||
| CheckM Completeness | 93.67 % | ||
| CheckM Contamination | 2.88 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM286148v1 |
| GenBank Assembly Accession | GCA_002861485.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002861485.1 [NCBI] |
| BioSample | SAMN08193643 [NCBI] |
| BioProject | PRJNA316969 [NCBI] |
| Submitter | Loyola University Chicago |
| Submission Date | 2017-12-16T21:05:04.718 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | PKGT01 |
| NCBI TaxID | 419015 |
| Isolation Source | |
| Geo Location | USA: Maywood, IL |
