Genome Meta Information: Porphyromonas gingivalis TDC 60 (GCA_002892555.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002892555.1 | ||
| HOMD Taxon-ID | HMT-0619 | ||
| Species Name (in use by HOMD) | Porphyromonas gingivalis | ||
| Organism Name (as deposited) | HMT-619 Porphyromonas gingivalis TDC 60 | ||
| Strain or Isolate | TDC 60 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas; s__Porphyromonas gingivalis |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 30.4 | ||
| Contigs |
|
||
| Total Sequence Length | 2,334,880 (bp) | ||
| GC Percentage | 48.35 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/892/555/GCA_002892555.1_ASM289255v1 | ||
| CDS | 1960 | ||
| Genes | 2042 | ||
| mRNA | 2042 | ||
| misc RNA | 16 | ||
| rRNA | 12 | ||
| tRNA | 53 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.42 % | ||
| CheckM Completeness | 98.64 % | ||
| CheckM Contamination | 0.45 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 3 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM289255v1 |
| GenBank Assembly Accession | GCA_002892555.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002892555.1 [NCBI] |
| BioSample | SAMN07315161 [NCBI] |
| BioProject | PRJNA393092 [NCBI] |
| Submitter | CNRS - Universite de Rennes 1 |
| Submission Date | 2017-07-05T06:44:02.590 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 837 |
| Isolation Source | Severe periodontal lesion |
| Geo Location | missing |
