Genome Meta Information: Porphyromonas gingivalis W83 (GCA_002892595.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002892595.1 | ||
| HOMD Taxon-ID | HMT-0619 | ||
| Species Name (in use by HOMD) | Porphyromonas gingivalis | ||
| Organism Name (as deposited) | HMT-619 Porphyromonas gingivalis W83 | ||
| Strain or Isolate | W83 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas; s__Porphyromonas gingivalis |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 29.7 | ||
| Contigs |
|
||
| Total Sequence Length | 2,343,999 (bp) | ||
| GC Percentage | 48.29 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/892/595/GCA_002892595.1_ASM289259v1 | ||
| CDS | 1995 | ||
| Genes | 2079 | ||
| mRNA | 2079 | ||
| misc RNA | 18 | ||
| rRNA | 12 | ||
| tRNA | 53 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.56 % | ||
| CheckM Completeness | 98.69 % | ||
| CheckM Contamination | 0.48 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 4 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM289259v1 |
| GenBank Assembly Accession | GCA_002892595.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002892595.1 [NCBI] |
| BioSample | SAMN07315163 [NCBI] |
| BioProject | PRJNA393092 [NCBI] |
| Submitter | CNRS - Universite de Rennes 1 |
| Submission Date | 2017-07-05T06:49:02.953 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 837 |
| Isolation Source | Human clinical specimen |
| Geo Location | missing |
