Genome Meta Information: Prevotella timonensis DNF00076 (GCA_002894165.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002894165.1 | ||
| HOMD Taxon-ID | HMT-0798 | ||
| Species Name (in use by HOMD) | Prevotella timonensis | ||
| Organism Name (as deposited) | HMT-798 Prevotella timonensis DNF00076 | ||
| Strain or Isolate | DNF00076 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella; s__Prevotella timonensis |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 24 | ||
| Contigs |
|
||
| Total Sequence Length | 3,000,907 (bp) | ||
| GC Percentage | 42.56 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/894/165/GCA_002894165.1_ASM289416v1 | ||
| CDS | 2510 | ||
| Genes | 2584 | ||
| mRNA | 2584 | ||
| misc RNA | 10 | ||
| rRNA | 10 | ||
| tRNA | 53 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.02 % | ||
| CheckM Completeness | 98.99 % | ||
| CheckM Contamination | 0.76 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM289416v1 |
| GenBank Assembly Accession | GCA_002894165.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002894165.1 [NCBI] |
| BioSample | SAMN05578556 [NCBI] |
| BioProject | PRJNA339004 [NCBI] |
| Submitter | University of Washington |
| Submission Date | 2016-08-15T17:56:03.296 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | NBAX01 |
| NCBI TaxID | 386414 |
| Isolation Source | vagina |
| Geo Location | USA: Seattle |
