Genome Meta Information: Pseudomonas fluorescens ATCC 13525 (GCA_002943685.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002943685.1 | ||
| HOMD Taxon-ID | HMT-0612 | ||
| Species Name (in use by HOMD) | Pseudomonas fluorescens | ||
| Organism Name (as deposited) | HMT-612 Pseudomonas fluorescens ATCC 13525 | ||
| Strain or Isolate | ATCC 13525 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E; s__Pseudomonas_E fluorescens |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 24.9 | ||
| Contigs |
|
||
| Total Sequence Length | 6,442,614 (bp) | ||
| GC Percentage | 60.04 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/943/685/GCA_002943685.1_ASM294368v1 | ||
| CDS | 5890 | ||
| Genes | 6046 | ||
| mRNA | 6046 | ||
| misc RNA | 93 | ||
| rRNA | 4 | ||
| tRNA | 58 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.98 % | ||
| CheckM Completeness | 99.33 % | ||
| CheckM Contamination | 0.77 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM294368v1 |
| GenBank Assembly Accession | GCA_002943685.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002943685.1 [NCBI] |
| BioSample | SAMN06049061 [NCBI] |
| BioProject | PRJNA354433 [NCBI] |
| Submitter | FDA |
| Submission Date | 2016-11-22T12:24:05.496 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | MUHI01 |
| NCBI TaxID | 294 |
| Isolation Source | pre-filter tanks |
| Geo Location | United Kingdom:England |
