Genome Meta Information: Capnocytophaga sp. HMT-878 F0545 (GCA_002999135.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_002999135.1 | ||
| HOMD Taxon-ID | HMT-0878 | ||
| Species Name (in use by HOMD) | Capnocytophaga sp. HMT-878 | ||
| Organism Name (as deposited) | HMT-878 Capnocytophaga sp. HMT-878 F0545 | ||
| Strain or Isolate | F0545 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga; s__Capnocytophaga sp002999135 |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 307 | ||
| Contigs |
|
||
| Total Sequence Length | 2,990,835 (bp) | ||
| GC Percentage | 37.95 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/999/135/GCA_002999135.1_ASM299913v1 | ||
| CDS | 2674 | ||
| Genes | 2739 | ||
| mRNA | 2739 | ||
| misc RNA | 4 | ||
| rRNA | 12 | ||
| tRNA | 48 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.55 % | ||
| CheckM Contamination | 0.1 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | No Pangenomes Available. | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM299913v1 |
| GenBank Assembly Accession | GCA_002999135.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_002999135.1 [NCBI] |
| BioSample | SAMN08472925 [NCBI] |
| BioProject | PRJNA282954 [NCBI] |
| Submitter | The Forsyth Institute |
| Submission Date | 2018-02-06T17:11:05.560 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1316596 |
| Isolation Source | coronal/gingival |
| Geo Location | USA: Cambridge, MA |
