Genome Meta Information: Campylobacter concisus P1CDO3 (GCA_003048685.2)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003048685.2 | ||
| HOMD Taxon-ID | HMT-0433 | ||
| Species Name (in use by HOMD) | Campylobacter concisus | ||
| Organism Name (as deposited) | HMT-433 Campylobacter concisus clade-433 P1CDO3 | ||
| Strain or Isolate | P1CDO3 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A; s__Campylobacter_A concisus_D |
||
| Sequencing Technology | Oxford Nanopore MiniION | ||
| Genome Coverage | 1045 | ||
| Contigs |
|
||
| Total Sequence Length | 2,051,359 (bp) | ||
| GC Percentage | 39.44 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/048/685/GCA_003048685.2_ASM304868v2 | ||
| CDS | 1973 | ||
| Genes | 2030 | ||
| mRNA | 0 | ||
| misc RNA | 4 | ||
| rRNA | 6 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 88.63 % | ||
| CheckM Completeness | 99.58 % | ||
| CheckM Contamination | 0.13 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM304868v2 |
| GenBank Assembly Accession | GCA_003048685.2 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003048685.2 [NCBI] |
| BioSample | SAMN08042483 [NCBI] |
| BioProject | PRJNA388128 [NCBI] |
| Submitter | University of New South Wales |
| Submission Date | 2017-11-19T22:48:03.880 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 199 |
| Isolation Source | saliva |
| Geo Location | Australia |
