Genome Meta Information: Eubacterium limosum 8486cho (GCA_003182515.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003182515.1 | ||
| HOMD Taxon-ID | HMT-0655 | ||
| Species Name (in use by HOMD) | Eubacterium limosum | ||
| Organism Name (as deposited) | HMT-655 Eubacterium limosum 8486cho | ||
| Strain or Isolate | 8486cho | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium; s__Eubacterium limosum |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 190 | ||
| Contigs |
|
||
| Total Sequence Length | 4,366,305 (bp) | ||
| GC Percentage | 47.18 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/182/515/GCA_003182515.1_ASM318251v1 | ||
| CDS | 4078 | ||
| Genes | 4244 | ||
| mRNA | 4244 | ||
| misc RNA | 111 | ||
| rRNA | 4 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 99.36 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM318251v1 |
| GenBank Assembly Accession | GCA_003182515.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003182515.1 [NCBI] |
| BioSample | SAMN08777811 [NCBI] |
| BioProject | PRJNA441676 [NCBI] |
| Submitter | DOE Joint Genome Institute |
| Submission Date | 2018-03-22T20:34:41.127 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | QGUD01 |
| NCBI TaxID | 1736 |
| Isolation Source | missing |
| Geo Location | missing |
