Genome Meta Information: Novosphingobium panipatense S2_005_002_R2_33 (GCA_003241455.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003241455.1 | ||
| HOMD Taxon-ID | HMT-0342 | ||
| Species Name (in use by HOMD) | Novosphingobium panipatense | ||
| Organism Name (as deposited) | HMT-342 Novosphingobium panipatense S2_005_002_R2_33 | ||
| Strain or Isolate | S2_005_002_R2_33 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Novosphingobium; s__Novosphingobium panipatense_A |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 2 | ||
| Contigs |
|
||
| Total Sequence Length | 5,286,817 (bp) | ||
| GC Percentage | 64.91 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/241/455/GCA_003241455.1_ASM324145v1 | ||
| CDS | 4754 | ||
| Genes | 4849 | ||
| mRNA | 4849 | ||
| misc RNA | 34 | ||
| rRNA | 1 | ||
| tRNA | 59 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 82.87 % | ||
| CheckM Completeness | 0 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM324145v1 |
| GenBank Assembly Accession | GCA_003241455.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | [NCBI] |
| BioSample | SAMN07426533 [NCBI] |
| BioProject | PRJNA376580 [NCBI] |
| Submitter | None |
| Submission Date | 2017-07-30T12:24:06.606 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | QFPX01 |
| NCBI TaxID | 205844 |
| Isolation Source | hospital NICU surfaces and sink samples |
| Geo Location | USA: Pittsburgh, Pennsylvania |
