Genome Meta Information: Haemophilus sp. HMT-036 C2001002324 (GCA_003252655.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003252655.1 | ||
| HOMD Taxon-ID | HMT-0036 | ||
| Species Name (in use by HOMD) | Haemophilus sp. HMT-036 | ||
| Organism Name (as deposited) | HMT-036 Haemophilus sp. HMT-036 C2001002324 | ||
| Strain or Isolate | C2001002324 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus; s__Haemophilus haemolyticus_K |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 27 | ||
| Contigs |
|
||
| Total Sequence Length | 1,882,180 (bp) | ||
| GC Percentage | 38.21 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/252/655/GCA_003252655.1_ASM325265v1 | ||
| CDS | 1750 | ||
| Genes | 1861 | ||
| mRNA | 1861 | ||
| misc RNA | 48 | ||
| rRNA | 10 | ||
| tRNA | 52 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 93.86 % | ||
| CheckM Completeness | 96.29 % | ||
| CheckM Contamination | 1.52 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM325265v1 |
| GenBank Assembly Accession | GCA_003252655.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003252655.1 [NCBI] |
| BioSample | SAMN09011143 [NCBI] |
| BioProject | PRJNA454666 [NCBI] |
| Submitter | Centers for Disease Control and Prevention |
| Submission Date | 2018-05-02T11:44:04.320 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | QEPL01 |
| NCBI TaxID | 726 |
| Isolation Source | sputum |
| Geo Location | USA: Minnesota |
