Genome Meta Information: Rhodobacter capsulatus DSM 1710 (GCA_003254295.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003254295.1 | ||
| HOMD Taxon-ID | HMT-0857 | ||
| Species Name (in use by HOMD) | Rhodobacter capsulatus | ||
| Organism Name (as deposited) | HMT-857 Rhodobacter capsulatus DSM 1710 | ||
| Strain or Isolate | DSM 1710 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Rhodobacter; s__Rhodobacter capsulatus |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 289 | ||
| Contigs |
|
||
| Total Sequence Length | 3,668,822 (bp) | ||
| GC Percentage | 66.56 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/254/295/GCA_003254295.1_ASM325429v1 | ||
| CDS | 3447 | ||
| Genes | 3532 | ||
| mRNA | 3532 | ||
| misc RNA | 27 | ||
| rRNA | 6 | ||
| tRNA | 51 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 98.95 % | ||
| CheckM Contamination | 1.47 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM325429v1 |
| GenBank Assembly Accession | GCA_003254295.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003254295.1 [NCBI] |
| BioSample | SAMN05660778 [NCBI] |
| BioProject | PRJNA262336 [NCBI] |
| Submitter | DOE Joint Genome Institute |
| Submission Date | 2016-08-25T14:38:39.870 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | QKZO01 |
| NCBI TaxID | 1061 |
| Isolation Source | missing |
| Geo Location | missing |
