Genome Meta Information: Limosilactobacillus fermentum CBA7106 (GCA_003255875.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003255875.1 | ||
| HOMD Taxon-ID | HMT-0608 | ||
| Species Name (in use by HOMD) | Limosilactobacillus fermentum | ||
| Organism Name (as deposited) | HMT-608 Limosilactobacillus fermentum CBA7106 | ||
| Strain or Isolate | CBA7106 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus; s__Limosilactobacillus fermentum |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 270 | ||
| Contigs |
|
||
| Total Sequence Length | 2,042,277 (bp) | ||
| GC Percentage | 51.66 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/255/875/GCA_003255875.1_ASM325587v1 | ||
| CDS | 1974 | ||
| Genes | 2077 | ||
| mRNA | 2077 | ||
| misc RNA | 28 | ||
| rRNA | 15 | ||
| tRNA | 59 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.27 % | ||
| CheckM Completeness | 96.38 % | ||
| CheckM Contamination | 3.54 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM325587v1 |
| GenBank Assembly Accession | GCA_003255875.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003255875.1 [NCBI] |
| BioSample | SAMN07224244 [NCBI] |
| BioProject | PRJNA390215 [NCBI] |
| Submitter | Korea Food Research Institute |
| Submission Date | 2017-06-12T21:39:03.106 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1613 |
| Isolation Source | adult feces |
| Geo Location | South Korea: Bundang |
