Genome Meta Information: Paracoccus yeei RSP-02 (GCA_003285265.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003285265.1 | ||
| HOMD Taxon-ID | HMT-0104 | ||
| Species Name (in use by HOMD) | Paracoccus yeei | ||
| Organism Name (as deposited) | HMT-104 Paracoccus yeei RSP-02 | ||
| Strain or Isolate | RSP-02 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus; s__Paracoccus yeei |
||
| Sequencing Technology | Illumina NextSeq 500 | ||
| Genome Coverage | 200 | ||
| Contigs |
|
||
| Total Sequence Length | 3,592,357 (bp) | ||
| GC Percentage | 67.32 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/285/265/GCA_003285265.1_ASM328526v1 | ||
| CDS | 4181 | ||
| Genes | 4270 | ||
| mRNA | 4270 | ||
| misc RNA | 23 | ||
| rRNA | 9 | ||
| tRNA | 56 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 65.01 % | ||
| CheckM Contamination | 0.54 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM328526v1 |
| GenBank Assembly Accession | GCA_003285265.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003285265.1 [NCBI] |
| BioSample | SAMN09453177 [NCBI] |
| BioProject | PRJNA476696 [NCBI] |
| Submitter | Bioserve Biotechnologies |
| Submission Date | 2018-06-19T07:44:05.983 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1499308 |
| Isolation Source | cellulosic waste soil |
| Geo Location | India: Sirpur Kagaznagar |
