Genome Meta Information: Eggerthella lenta ATCC 25559 (GCA_003340105.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003340105.1 | ||
| HOMD Taxon-ID | HMT-0654 | ||
| Species Name (in use by HOMD) | Eggerthella lenta | ||
| Organism Name (as deposited) | HMT-654 Eggerthella lenta ATCC 25559 | ||
| Strain or Isolate | ATCC 25559 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Eggerthella; s__Eggerthella lenta |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 323 | ||
| Contigs |
|
||
| Total Sequence Length | 3,596,161 (bp) | ||
| GC Percentage | 64.19 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/340/105/GCA_003340105.1_ASM334010v1 | ||
| CDS | 3095 | ||
| Genes | 3164 | ||
| mRNA | 3164 | ||
| misc RNA | 13 | ||
| rRNA | 3 | ||
| tRNA | 52 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 98.37 % | ||
| CheckM Contamination | 0.7 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM334010v1 |
| GenBank Assembly Accession | GCA_003340105.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003340105.1 [NCBI] |
| BioSample | SAMN08365971 [NCBI] |
| BioProject | PRJNA412637 [NCBI] |
| Submitter | UCSF |
| Submission Date | 2018-01-15T16:07:03.583 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | PPUH01 |
| NCBI TaxID | 84112 |
| Isolation Source | Rectal Tumor |
| Geo Location | France: Paris, Ile-de-France |
