Genome Meta Information: Pseudomonas oleovorans phDV1 (GCA_003408635.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003408635.1 | ||
| HOMD Taxon-ID | HMT-0740 | ||
| Species Name (in use by HOMD) | Pseudomonas oleovorans | ||
| Organism Name (as deposited) | HMT-740 Pseudomonas oleovorans phDV1 | ||
| Strain or Isolate | phDV1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E; s__Pseudomonas_E oleovorans |
||
| Sequencing Technology | PacBio RSII | ||
| Genome Coverage | 208 | ||
| Contigs |
|
||
| Total Sequence Length | 4,727,682 (bp) | ||
| GC Percentage | 62.31 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/408/635/GCA_003408635.1_ASM340863v1 | ||
| CDS | 4399 | ||
| Genes | 4693 | ||
| mRNA | 4693 | ||
| misc RNA | 211 | ||
| rRNA | 12 | ||
| tRNA | 70 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.17 % | ||
| CheckM Contamination | 0.96 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM340863v1 |
| GenBank Assembly Accession | GCA_003408635.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003408635.1 [NCBI] |
| BioSample | SAMN09812539 [NCBI] |
| BioProject | PRJNA485677 [NCBI] |
| Submitter | The Max Planck Institute of Biophysics |
| Submission Date | 2018-08-13T06:13:02.937 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 253237 |
| Isolation Source | petroleum-contaminated soi |
| Geo Location | Denmark |
