Taxon Table | Genome Table
Genome Meta Information:
Pseudomonas
fluorescens
ATCC 13525 (GCA_003417575.1)
| HOMD Genome-ID |
GCA_003417575.1
|
| HOMD Taxon-ID |
HMT-0612
|
| Species Name (in use by HOMD) |
Pseudomonas fluorescens
|
| Organism Name (as deposited) |
HMT-612 Pseudomonas fluorescens ATCC 13525
|
| Strain or Isolate |
ATCC 13525
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E;
s__Pseudomonas_E fluorescens |
| Sequencing Technology |
IonTorrent
|
| Genome Coverage |
78
|
| Contigs |
Number of Contigs: 279
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
6,447,692 (bp) |
| GC Percentage |
59.99
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/417/575/GCA_003417575.1_ASM341757v1
|
| CDS |
6398
|
| Genes |
6566
|
| mRNA |
6566
|
| misc RNA |
94
|
| rRNA |
7
|
| tRNA |
66
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
99.96 %
|
| CheckM Completeness |
84.25 %
|
| CheckM Contamination |
0.68 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
No Available
Data |
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM341757v1
|
| GenBank Assembly Accession |
GCA_003417575.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_003417575.1
[NCBI]
|
| BioSample |
SAMN09844436
[NCBI]
|
| BioProject |
PRJNA486371
[NCBI]
|
| Submitter |
Environment and Climate Change Canada
|
| Submission Date |
2018-08-16T15:31:02.797
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
QVNA01
|
| NCBI TaxID |
294
|
| Isolation Source |
Pre-filter tanks
|
| Geo Location |
United Kingdom: Reading town w
|
