Genome Meta Information: Lactobacillus johnsonii IDCC9203 (GCA_003428395.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003428395.1 | ||
| HOMD Taxon-ID | HMT-0819 | ||
| Species Name (in use by HOMD) | Lactobacillus johnsonii | ||
| Organism Name (as deposited) | HMT-819 Lactobacillus johnsonii IDCC9203 | ||
| Strain or Isolate | IDCC9203 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus; s__Lactobacillus johnsonii |
||
| Sequencing Technology | PacBio RSII; Illumina HiSeq | ||
| Genome Coverage | 6 | ||
| Contigs |
|
||
| Total Sequence Length | 1,898,461 (bp) | ||
| GC Percentage | 34.72 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/428/395/GCA_003428395.1_ASM342839v1 | ||
| CDS | 1882 | ||
| Genes | 2012 | ||
| mRNA | 2012 | ||
| misc RNA | 30 | ||
| rRNA | 21 | ||
| tRNA | 78 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.43 % | ||
| CheckM Completeness | 95.53 % | ||
| CheckM Contamination | 0.37 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM342839v1 |
| GenBank Assembly Accession | GCA_003428395.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003428395.1 [NCBI] |
| BioSample | SAMN09858432 [NCBI] |
| BioProject | PRJNA486604 [NCBI] |
| Submitter | Research Laboratories, Ildong Pharmaceutical |
| Submission Date | 2018-08-19T04:14:04.516 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 33959 |
| Isolation Source | Infant feces |
| Geo Location | South Korea: Gyeonggi |
