Genome Meta Information: Parabacteroides merdae AM16-50 (GCA_003470675.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003470675.1 | ||
| HOMD Taxon-ID | HMT-0974 | ||
| Species Name (in use by HOMD) | Parabacteroides merdae | ||
| Organism Name (as deposited) | HMT-974 Parabacteroides merdae AM16-50 | ||
| Strain or Isolate | AM16-50 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides; s__Parabacteroides merdae |
||
| Sequencing Technology | Illumina Hiseq | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 4,595,261 (bp) | ||
| GC Percentage | 45.42 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/470/675/GCA_003470675.1_ASM347067v1 | ||
| CDS | 3823 | ||
| Genes | 3914 | ||
| mRNA | 3914 | ||
| misc RNA | 17 | ||
| rRNA | 3 | ||
| tRNA | 70 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.94 % | ||
| CheckM Completeness | 95.74 % | ||
| CheckM Contamination | 5.23 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM347067v1 |
| GenBank Assembly Accession | GCA_003470675.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003470675.1 [NCBI] |
| BioSample | SAMN09734838 [NCBI] |
| BioProject | PRJNA482748 [NCBI] |
| Submitter | BGI |
| Submission Date | 2018-07-29T08:47:16.110 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | QRKC01 |
| NCBI TaxID | 46503 |
| Isolation Source | feces |
| Geo Location | China: Shenzhen |
