Genome Meta Information: Phocaeicola plebeius AM17-44 (GCA_003471645.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003471645.1 | ||
| HOMD Taxon-ID | HMT-0977 | ||
| Species Name (in use by HOMD) | Phocaeicola plebeius | ||
| Organism Name (as deposited) | HMT-977 Phocaeicola plebeius AM17-44 | ||
| Strain or Isolate | AM17-44 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola; s__Phocaeicola plebeius |
||
| Sequencing Technology | Illumina Hiseq | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 3,530,609 (bp) | ||
| GC Percentage | 44.29 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/471/645/GCA_003471645.1_ASM347164v1 | ||
| CDS | 2966 | ||
| Genes | 3110 | ||
| mRNA | 3110 | ||
| misc RNA | 44 | ||
| rRNA | 4 | ||
| tRNA | 95 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.31 % | ||
| CheckM Completeness | 100 % | ||
| CheckM Contamination | 1.15 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM347164v1 |
| GenBank Assembly Accession | GCA_003471645.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003471645.1 [NCBI] |
| BioSample | SAMN09734851 [NCBI] |
| BioProject | PRJNA482748 [NCBI] |
| Submitter | BGI |
| Submission Date | 2018-07-29T08:47:16.313 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | QRJS01 |
| NCBI TaxID | 310297 |
| Isolation Source | feces |
| Geo Location | China: Shenzhen |
