Genome Meta Information: Phocaeicola plebeius AF39-11 (GCA_003474305.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003474305.1 | ||
| HOMD Taxon-ID | HMT-0977 | ||
| Species Name (in use by HOMD) | Phocaeicola plebeius | ||
| Organism Name (as deposited) | HMT-977 Phocaeicola plebeius AF39-11 | ||
| Strain or Isolate | AF39-11 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola; s__Phocaeicola plebeius |
||
| Sequencing Technology | Illumina Hiseq | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 3,729,283 (bp) | ||
| GC Percentage | 44.35 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/474/305/GCA_003474305.1_ASM347430v1 | ||
| CDS | 3199 | ||
| Genes | 3298 | ||
| mRNA | 3298 | ||
| misc RNA | 20 | ||
| rRNA | 3 | ||
| tRNA | 75 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.17 % | ||
| CheckM Completeness | 100 % | ||
| CheckM Contamination | 0.71 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM347430v1 |
| GenBank Assembly Accession | GCA_003474305.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003474305.1 [NCBI] |
| BioSample | SAMN09734682 [NCBI] |
| BioProject | PRJNA482748 [NCBI] |
| Submitter | BGI |
| Submission Date | 2018-07-29T08:47:13.813 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | QROI01 |
| NCBI TaxID | 310297 |
| Isolation Source | feces |
| Geo Location | China: Shenzhen |
