Genome Meta Information: Porphyromonas gingivalis UBA8864 (GCA_003514485.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003514485.1 | ||
| HOMD Taxon-ID | HMT-0619 | ||
| Species Name (in use by HOMD) | Porphyromonas gingivalis | ||
| Organism Name (as deposited) | HMT-619 Porphyromonas gingivalis UBA8864 | ||
| Strain or Isolate | UBA8864 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas; s__Porphyromonas gingivalis |
||
| Sequencing Technology | Illumina HiSeq 2000 | ||
| Genome Coverage | 26.94 | ||
| Contigs |
|
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| Total Sequence Length | 1,783,976 (bp) | ||
| GC Percentage | 49.22 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/514/485/GCA_003514485.1_ASM351448v1 | ||
| CDS | 1465 | ||
| Genes | 1512 | ||
| mRNA | 1512 | ||
| misc RNA | 9 | ||
| rRNA | 0 | ||
| tRNA | 37 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 0 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM351448v1 |
| GenBank Assembly Accession | GCA_003514485.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | [NCBI] |
| BioSample | SAMN08019346 [NCBI] |
| BioProject | PRJNA417962 [NCBI] |
| Submitter | University of Queensland |
| Submission Date | 2017-11-13T20:25:22.827 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | DOQB01 |
| NCBI TaxID | 837 |
| Isolation Source | metagenome |
| Geo Location | not applicable |
