Genome Meta Information: Prevotella denticola KCOM 1525 (GCA_003515045.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003515045.1 | ||
| HOMD Taxon-ID | HMT-0291 | ||
| Species Name (in use by HOMD) | Prevotella denticola | ||
| Organism Name (as deposited) | HMT-291 Prevotella denticola KCOM 1525 | ||
| Strain or Isolate | KCOM 1525 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella; s__Prevotella denticola |
||
| Sequencing Technology | PacBio; Illumina HiSeq | ||
| Genome Coverage | 984.8 | ||
| Contigs |
|
||
| Total Sequence Length | 2,893,847 (bp) | ||
| GC Percentage | 50.13 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/515/045/GCA_003515045.1_ASM351504v1 | ||
| CDS | 2323 | ||
| Genes | 2395 | ||
| mRNA | 2395 | ||
| misc RNA | 8 | ||
| rRNA | 12 | ||
| tRNA | 51 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.91 % | ||
| CheckM Completeness | 94.09 % | ||
| CheckM Contamination | 2.78 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM351504v1 |
| GenBank Assembly Accession | GCA_003515045.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003515045.1 [NCBI] |
| BioSample | SAMN09781058 [NCBI] |
| BioProject | PRJNA485030 [NCBI] |
| Submitter | Korean Collection for Oral Microbiology |
| Submission Date | 2018-08-08T03:27:06.223 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 28129 |
| Isolation Source | Periapical abscess |
| Geo Location | South Korea: Gwangju |
