Genome Meta Information: Staphylococcus caprae UBA10739 (GCA_003522455.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003522455.1 | ||
| HOMD Taxon-ID | HMT-0567 | ||
| Species Name (in use by HOMD) | Staphylococcus caprae | ||
| Organism Name (as deposited) | HMT-567 Staphylococcus caprae UBA10739 | ||
| Strain or Isolate | UBA10739 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus caprae |
||
| Sequencing Technology | Illumina HiSeq 2000 | ||
| Genome Coverage | 26.25 | ||
| Contigs |
|
||
| Total Sequence Length | 2,229,926 (bp) | ||
| GC Percentage | 33.71 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/522/455/GCA_003522455.1_ASM352245v1 | ||
| CDS | 2126 | ||
| Genes | 2206 | ||
| mRNA | 2206 | ||
| misc RNA | 48 | ||
| rRNA | 1 | ||
| tRNA | 31 | ||
| tmRNA | 0 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 92.31 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM352245v1 |
| GenBank Assembly Accession | GCA_003522455.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003522455.1 [NCBI] |
| BioSample | SAMN08018960 [NCBI] |
| BioProject | PRJNA417962 [NCBI] |
| Submitter | University of Queensland |
| Submission Date | 2017-11-13T20:25:16.220 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | DPFI01 |
| NCBI TaxID | 29387 |
| Isolation Source | metagenome |
| Geo Location | not applicable |
