Taxon Table | Genome Table
Genome Meta Information:
Staphylococcus
caprae
SNUC 4023 (GCA_003578345.1)
| HOMD Genome-ID |
GCA_003578345.1
|
| HOMD Taxon-ID |
HMT-0567
|
| Species Name (in use by HOMD) |
Staphylococcus caprae
|
| Organism Name (as deposited) |
HMT-567 Staphylococcus caprae SNUC 4023
|
| Strain or Isolate |
SNUC 4023
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus;
s__Staphylococcus caprae |
| Sequencing Technology |
Illumina MiSeq
|
| Genome Coverage |
40
|
| Contigs |
Number of Contigs: 141
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,580,743 (bp) |
| GC Percentage |
33.43
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/578/345/GCA_003578345.1_ASM357834v1
|
| CDS |
2428
|
| Genes |
2578
|
| mRNA |
2578
|
| misc RNA |
79
|
| rRNA |
9
|
| tRNA |
61
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
98.37 %
|
| CheckM Completeness |
99.2 %
|
| CheckM Contamination |
0 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
No Available
Data |
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM357834v1
|
| GenBank Assembly Accession |
GCA_003578345.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_003578345.1
[NCBI]
|
| BioSample |
SAMN06172864
[NCBI]
|
| BioProject |
PRJNA342349
[NCBI]
|
| Submitter |
University of Calgary
|
| Submission Date |
2016-12-21T14:04:04.270
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
QXRK01
|
| NCBI TaxID |
29380
|
| Isolation Source |
Herd 211
|
| Geo Location |
Canada: Ontario
|
