Genome Meta Information: Mycobacterium leprae Kyoto-2 (GCA_003584725.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003584725.1 | ||
| HOMD Taxon-ID | HMT-0823 | ||
| Species Name (in use by HOMD) | Mycobacterium leprae | ||
| Organism Name (as deposited) | HMT-823 Mycobacterium leprae Kyoto-2 | ||
| Strain or Isolate | Kyoto-2 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium; s__Mycobacterium leprae |
||
| Sequencing Technology | Illumina GAIIx; ABI 3130 | ||
| Genome Coverage | 500 | ||
| Contigs |
|
||
| Total Sequence Length | 3,268,122 (bp) | ||
| GC Percentage | 57.8 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/584/725/GCA_003584725.1_ASM358472v1 | ||
| CDS | 3963 | ||
| Genes | 4034 | ||
| mRNA | 4034 | ||
| misc RNA | 21 | ||
| rRNA | 3 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 96.61 % | ||
| CheckM Contamination | 0.54 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM358472v1 |
| GenBank Assembly Accession | GCA_003584725.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003584725.1 [NCBI] |
| BioSample | SAMD00011899 [NCBI] |
| BioProject | PRJNA65803 [NCBI] |
| Submitter | Leprosy Research Center, National Institute of Infectious Diseases |
| Submission Date | 2017-12-27T01:00:16.015 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1008298 |
| Isolation Source | |
| Geo Location | |
