Genome Meta Information: Prevotella melaninogenica GAI 07411 (GCA_003609775.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003609775.1 | ||
| HOMD Taxon-ID | HMT-0469 | ||
| Species Name (in use by HOMD) | Prevotella melaninogenica | ||
| Organism Name (as deposited) | HMT-469 Prevotella melaninogenica GAI 07411 | ||
| Strain or Isolate | GAI 07411 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella; s__Prevotella melaninogenica_A |
||
| Sequencing Technology | PacBio RSII | ||
| Genome Coverage | 246 | ||
| Contigs |
|
||
| Total Sequence Length | 3,090,326 (bp) | ||
| GC Percentage | 40.77 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/609/775/GCA_003609775.1_ASM360977v1 | ||
| CDS | 2407 | ||
| Genes | 2480 | ||
| mRNA | 2480 | ||
| misc RNA | 8 | ||
| rRNA | 12 | ||
| tRNA | 52 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 90.71 % | ||
| CheckM Completeness | 89.21 % | ||
| CheckM Contamination | 2.34 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM360977v1 |
| GenBank Assembly Accession | GCA_003609775.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003609775.1 [NCBI] |
| BioSample | SAMD00078755 [NCBI] |
| BioProject | PRJDB5703 [NCBI] |
| Submitter | Department of Pediatric Dentistry, Nagasaki University Graduate School of Biomedical Sciences |
| Submission Date | 2017-09-02T01:00:30.256 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 28132 |
| Isolation Source | |
| Geo Location | Japan |
