Genome Meta Information: Paracoccus yeei CCUG 32053 (GCA_003612915.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003612915.1 | ||
| HOMD Taxon-ID | HMT-0104 | ||
| Species Name (in use by HOMD) | Paracoccus yeei | ||
| Organism Name (as deposited) | HMT-104 Paracoccus yeei CCUG 32053 | ||
| Strain or Isolate | CCUG 32053 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus; s__Paracoccus yeei |
||
| Sequencing Technology | Illumina; MinION | ||
| Genome Coverage | 151 | ||
| Contigs |
|
||
| Total Sequence Length | 4,668,852 (bp) | ||
| GC Percentage | 67.4 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/612/915/GCA_003612915.1_ASM361291v1 | ||
| CDS | 4545 | ||
| Genes | 4643 | ||
| mRNA | 4643 | ||
| misc RNA | 27 | ||
| rRNA | 9 | ||
| tRNA | 61 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.33 % | ||
| CheckM Completeness | 99.5 % | ||
| CheckM Contamination | 0.9 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM361291v1 |
| GenBank Assembly Accession | GCA_003612915.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003612915.1 [NCBI] |
| BioSample | SAMN09630968 [NCBI] |
| BioProject | PRJNA480219 [NCBI] |
| Submitter | University of Warsaw, Faculty of Biology, Institute of Microbiology |
| Submission Date | 2018-07-09T09:35:05.877 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 147645 |
| Isolation Source | eye |
| Geo Location | USA: Missouri |
