Genome Meta Information: Moraxella catarrhalis COPD_M40 (GCA_003626415.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003626415.1 | ||
| HOMD Taxon-ID | HMT-0833 | ||
| Species Name (in use by HOMD) | Moraxella catarrhalis | ||
| Organism Name (as deposited) | HMT-833 Moraxella catarrhalis COPD_M40 | ||
| Strain or Isolate | COPD_M40 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella; s__Moraxella catarrhalis |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 29 | ||
| Contigs |
|
||
| Total Sequence Length | 1,883,417 (bp) | ||
| GC Percentage | 41.63 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/626/415/GCA_003626415.1_ASM362641v1 | ||
| CDS | 1714 | ||
| Genes | 1771 | ||
| mRNA | 1771 | ||
| misc RNA | 9 | ||
| rRNA | 3 | ||
| tRNA | 44 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.19 % | ||
| CheckM Completeness | 99.01 % | ||
| CheckM Contamination | 0.29 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM362641v1 |
| GenBank Assembly Accession | GCA_003626415.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003626415.1 [NCBI] |
| BioSample | SAMN09947528 [NCBI] |
| BioProject | PRJNA488991 [NCBI] |
| Submitter | University of Leicester |
| Submission Date | 2018-09-03T08:00:09.870 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | QZHO01 |
| NCBI TaxID | 480 |
| Isolation Source | sputum |
| Geo Location | United Kingdom: Leicester |
