Taxon Table | Genome Table
Genome Meta Information:
Leptotrichia
sp. HMT-498
bin_23 (GCA_003638725.1)
| HOMD Genome-ID |
GCA_003638725.1
|
| HOMD Taxon-ID |
HMT-0498
|
| Species Name (in use by HOMD) |
Leptotrichia sp. HMT-498
|
| Organism Name (as deposited) |
HMT-498 Leptotrichia sp. HMT-498 bin_23
|
| Strain or Isolate |
bin_23
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia;
s__Leptotrichia sp002240055 |
| Sequencing Technology |
Illumina NextSeq 500
|
| Genome Coverage |
8.34734
|
| Contigs |
Number of Contigs: 138
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
1,129,771 (bp) |
| GC Percentage |
29.04
|
| MAG |
yes
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/638/725/GCA_003638725.1_ASM363872v1
|
| CDS |
1022
|
| Genes |
1046
|
| mRNA |
1046
|
| misc RNA |
14
|
| rRNA |
0
|
| tRNA |
9
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
%
|
| CheckM Completeness |
69.12 %
|
| CheckM Contamination |
1.54 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
No Available
Data |
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM363872v1
|
| GenBank Assembly Accession |
GCA_003638725.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
[NCBI]
|
| BioSample |
SAMN10134573
[NCBI]
|
| BioProject |
PRJNA383868
[NCBI]
|
| Submitter |
J. Craig Venter Institute
|
| Submission Date |
2018-09-26T17:53:04.627
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
RBKD01
|
| NCBI TaxID |
104608
|
| Isolation Source |
supragingival plaque isolated from 88 juvenile twins
|
| Geo Location |
Australia
|
