Taxon Table | Genome Table
Genome Meta Information:
Schaalia
hongkongensis
bin_1 (GCA_003639045.1)
| HOMD Genome-ID |
GCA_003639045.1
|
| HOMD Taxon-ID |
HMT-0178
|
| Species Name (in use by HOMD) |
Schaalia hongkongensis
|
| Organism Name (as deposited) |
HMT-178 Schaalia hongkongensis bin_1
|
| Strain or Isolate |
bin_1
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia;
s__Pauljensenia hongkongensis |
| Sequencing Technology |
Illumina NextSeq 500
|
| Genome Coverage |
11.2133
|
| Contigs |
Number of Contigs: 159
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
1,799,133 (bp) |
| GC Percentage |
71.51
|
| MAG |
yes
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/639/045/GCA_003639045.1_ASM363904v1
|
| CDS |
1519
|
| Genes |
1548
|
| mRNA |
1548
|
| misc RNA |
6
|
| rRNA |
0
|
| tRNA |
23
|
| tmRNA |
0
|
| ANI (Average Nucluotide Identity) |
%
|
| CheckM Completeness |
0 %
|
| CheckM Contamination |
0 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
| CRISPR-cas |
1 Contig
[View]
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM363904v1
|
| GenBank Assembly Accession |
GCA_003639045.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
[NCBI]
|
| BioSample |
SAMN10134551
[NCBI]
|
| BioProject |
PRJNA383868
[NCBI]
|
| Submitter |
J. Craig Venter Institute
|
| Submission Date |
2018-09-26T17:53:04.230
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
RBJH01
|
| NCBI TaxID |
29317
|
| Isolation Source |
supragingival plaque isolated from 88 juvenile twins
|
| Geo Location |
Australia
|
