Genome Meta Information: Lactiplantibacillus plantarum DSM 16365 (GCA_003641165.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003641165.1 | ||
| HOMD Taxon-ID | HMT-0861 | ||
| Species Name (in use by HOMD) | Lactiplantibacillus plantarum | ||
| Organism Name (as deposited) | HMT-861 Lactiplantibacillus plantarum DSM 16365 | ||
| Strain or Isolate | DSM 16365 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactiplantibacillus; s__Lactiplantibacillus plantarum |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 308.98 | ||
| Contigs |
|
||
| Total Sequence Length | 3,350,338 (bp) | ||
| GC Percentage | 44.97 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/641/165/GCA_003641165.1_ASM364116v1 | ||
| CDS | 3184 | ||
| Genes | 3285 | ||
| mRNA | 0 | ||
| misc RNA | 0 | ||
| rRNA | 16 | ||
| tRNA | 84 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.98 % | ||
| CheckM Completeness | 99.35 % | ||
| CheckM Contamination | 1.39 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM364116v1 |
| GenBank Assembly Accession | GCA_003641165.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003641165.1 [NCBI] |
| BioSample | SAMN10174878 [NCBI] |
| BioProject | PRJNA494615 [NCBI] |
| Submitter | Korea University |
| Submission Date | 2018-10-04T00:28:03.360 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 271881 |
| Isolation Source | fermented cassava roots (fufu) |
| Geo Location | Nigeria |
