Taxon Table | Genome Table
Genome Meta Information:
Kocuria
rhizophila
TA68 (GCA_003667225.1)
| HOMD Genome-ID |
GCA_003667225.1
|
| HOMD Taxon-ID |
HMT-0197
|
| Species Name (in use by HOMD) |
Kocuria rhizophila
|
| Organism Name (as deposited) |
HMT-197 Kocuria rhizophila TA68
|
| Strain or Isolate |
TA68
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Kocuria;
s__Kocuria rhizophila |
| Sequencing Technology |
Illumina MiSeq
|
| Genome Coverage |
36
|
| Contigs |
Number of Contigs: 195
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,701,536 (bp) |
| GC Percentage |
70.73
|
| MAG |
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/667/225/GCA_003667225.1_ASM366722v1
|
| CDS |
2308
|
| Genes |
2384
|
| mRNA |
2384
|
| misc RNA |
21
|
| rRNA |
5
|
| tRNA |
49
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
%
|
| CheckM Completeness |
99.16 %
|
| CheckM Contamination |
0.26 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
1 Contig
[View]
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM366722v1
|
| GenBank Assembly Accession |
GCA_003667225.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_003667225.1
[NCBI]
|
| BioSample |
SAMN10230831
[NCBI]
|
| BioProject |
PRJNA495744
[NCBI]
|
| Submitter |
Institute of Pharmacy and Molecular Biotechnology
|
| Submission Date |
2018-10-11T08:51:05.620
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
RCOM01
|
| NCBI TaxID |
72000
|
| Isolation Source |
rhizosphere of Typha angustiflora
|
| Geo Location |
Hungary: Soroksar river (tribu
|
