Genome Meta Information: Pseudomonas luteola LTJR-52 (GCA_003691465.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003691465.1 | ||
| HOMD Taxon-ID | HMT-0344 | ||
| Species Name (in use by HOMD) | Pseudomonas luteola | ||
| Organism Name (as deposited) | HMT-344 Pseudomonas luteola LTJR-52 | ||
| Strain or Isolate | LTJR-52 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_B; s__Pseudomonas_B luteola |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 500 | ||
| Contigs |
|
||
| Total Sequence Length | 5,539,211 (bp) | ||
| GC Percentage | 55.17 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/691/465/GCA_003691465.1_ASM369146v1 | ||
| CDS | 5153 | ||
| Genes | 5301 | ||
| mRNA | 5301 | ||
| misc RNA | 56 | ||
| rRNA | 21 | ||
| tRNA | 70 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 98.88 % | ||
| CheckM Contamination | 1.36 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM369146v1 |
| GenBank Assembly Accession | GCA_003691465.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003691465.1 [NCBI] |
| BioSample | SAMN10255221 [NCBI] |
| BioProject | PRJNA495108 [NCBI] |
| Submitter | Hong Kong University of Science and Technology |
| Submission Date | 2018-10-17T22:17:04.143 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 2479392 |
| Isolation Source | |
| Geo Location | China: Xinjiang Province |
