Genome Meta Information: Escherichia coli ATCC 11775 (GCA_003697165.2)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003697165.2 | ||
| HOMD Taxon-ID | HMT-0574 | ||
| Species Name (in use by HOMD) | Escherichia coli | ||
| Organism Name (as deposited) | HMT-574 Escherichia coli ATCC 11775 | ||
| Strain or Isolate | ATCC 11775 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia; s__Escherichia coli |
||
| Sequencing Technology | Oxford Nanopore MiniION | ||
| Genome Coverage | 800 | ||
| Contigs |
|
||
| Total Sequence Length | 5,034,834 (bp) | ||
| GC Percentage | 50.64 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/697/165/GCA_003697165.2_ASM369716v2 | ||
| CDS | 4708 | ||
| Genes | 5057 | ||
| mRNA | 5057 | ||
| misc RNA | 238 | ||
| rRNA | 22 | ||
| tRNA | 88 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.98 % | ||
| CheckM Completeness | 99.09 % | ||
| CheckM Contamination | 0.45 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM369716v2 |
| GenBank Assembly Accession | GCA_003697165.2 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003697165.2 [NCBI] |
| BioSample | SAMN10252913 [NCBI] |
| BioProject | PRJNA472652 [NCBI] |
| Submitter | University of Arkansas for Medical Sciences |
| Submission Date | 2018-10-17T13:18:03.363 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 866789 |
| Isolation Source | |
| Geo Location | N/A |
