Genome Meta Information: Propionibacterium acidifaciens FDAARGOS_576 (GCA_003798325.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003798325.1 | ||
| HOMD Taxon-ID | HMT-0191 | ||
| Species Name (in use by HOMD) | Propionibacterium acidifaciens | ||
| Organism Name (as deposited) | HMT-191 Propionibacterium acidifaciens FDAARGOS_576 | ||
| Strain or Isolate | FDAARGOS_576 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Propionibacterium; s__Propionibacterium acidifaciens |
||
| Sequencing Technology | PacBio; Illumina | ||
| Genome Coverage | 944.554 | ||
| Contigs |
|
||
| Total Sequence Length | 3,072,768 (bp) | ||
| GC Percentage | 70.59 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/798/325/GCA_003798325.1_ASM379832v1 | ||
| CDS | 2560 | ||
| Genes | 2639 | ||
| mRNA | 2639 | ||
| misc RNA | 23 | ||
| rRNA | 6 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.25 % | ||
| CheckM Completeness | 96.68 % | ||
| CheckM Contamination | 1.99 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM379832v1 |
| GenBank Assembly Accession | GCA_003798325.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003798325.1 [NCBI] |
| BioSample | SAMN10228556 [NCBI] |
| BioProject | PRJNA231221 [NCBI] |
| Submitter | US Food and Drug Administration |
| Submission Date | 2018-10-10T13:50:04.993 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 556499 |
| Isolation Source | Subgingival plaque |
| Geo Location | Unknown |
