Genome Meta Information: Staphylococcus epidermidis FDAARGOS_529 (GCA_003812425.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003812425.1 | ||
| HOMD Taxon-ID | HMT-0601 | ||
| Species Name (in use by HOMD) | Staphylococcus epidermidis | ||
| Organism Name (as deposited) | HMT-601 Staphylococcus epidermidis FDAARGOS_529 | ||
| Strain or Isolate | FDAARGOS_529 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus epidermidis |
||
| Sequencing Technology | PacBio; Illumina | ||
| Genome Coverage | 2140.01 | ||
| Contigs |
|
||
| Total Sequence Length | 2,577,406 (bp) | ||
| GC Percentage | 32.22 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/812/425/GCA_003812425.1_ASM381242v1 | ||
| CDS | 2377 | ||
| Genes | 2546 | ||
| mRNA | 2546 | ||
| misc RNA | 88 | ||
| rRNA | 19 | ||
| tRNA | 61 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.18 % | ||
| CheckM Completeness | 99.64 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM381242v1 |
| GenBank Assembly Accession | GCA_003812425.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003812425.1 [NCBI] |
| BioSample | SAMN10163224 [NCBI] |
| BioProject | PRJNA231221 [NCBI] |
| Submitter | US Food and Drug Administration |
| Submission Date | 2018-10-02T12:23:10.520 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1282 |
| Isolation Source | CVP line blood |
| Geo Location | not applicable |
