Genome Meta Information: Prevotella intermedia ATCC 15033 (GCA_003861325.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003861325.1 | ||
| HOMD Taxon-ID | HMT-0643 | ||
| Species Name (in use by HOMD) | Prevotella intermedia | ||
| Organism Name (as deposited) | HMT-643 Prevotella intermedia ATCC 15033 | ||
| Strain or Isolate | ATCC 15033 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella; s__Prevotella intermedia |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 846 | ||
| Contigs |
|
||
| Total Sequence Length | 2,849,281 (bp) | ||
| GC Percentage | 43.46 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/861/325/GCA_003861325.1_ASM386132v1 | ||
| CDS | 2448 | ||
| Genes | 2513 | ||
| mRNA | 2513 | ||
| misc RNA | 14 | ||
| rRNA | 5 | ||
| tRNA | 45 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.47 % | ||
| CheckM Completeness | 87.46 % | ||
| CheckM Contamination | 12.3 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM386132v1 |
| GenBank Assembly Accession | GCA_003861325.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003861325.1 [NCBI] |
| BioSample | SAMN09939780 [NCBI] |
| BioProject | PRJNA488694 [NCBI] |
| Submitter | Kyung Hee University |
| Submission Date | 2018-08-31T02:57:04.567 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | QXEN01 |
| NCBI TaxID | 28131 |
| Isolation Source | |
| Geo Location | missing |
