Genome Meta Information: Porphyromonas gingivalis 381OKJP (GCA_003862255.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003862255.1 | ||
| HOMD Taxon-ID | HMT-0619 | ||
| Species Name (in use by HOMD) | Porphyromonas gingivalis | ||
| Organism Name (as deposited) | HMT-619 Porphyromonas gingivalis 381OKJP | ||
| Strain or Isolate | 381OKJP | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas; s__Porphyromonas gingivalis |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 75.89 | ||
| Contigs |
|
||
| Total Sequence Length | 2,325,530 (bp) | ||
| GC Percentage | 48.47 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/862/255/GCA_003862255.1_ASM386225v1 | ||
| CDS | 1976 | ||
| Genes | 2045 | ||
| mRNA | 2045 | ||
| misc RNA | 14 | ||
| rRNA | 7 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.48 % | ||
| CheckM Completeness | 97.76 % | ||
| CheckM Contamination | 1.23 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM386225v1 |
| GenBank Assembly Accession | GCA_003862255.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003862255.1 [NCBI] |
| BioSample | SAMN09403941 [NCBI] |
| BioProject | PRJNA475798 [NCBI] |
| Submitter | Rutgers School of Dental Medicine |
| Submission Date | 2018-06-12T16:33:02.833 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | QPGS01 |
| NCBI TaxID | 837 |
| Isolation Source | parent strain 381 obtained from the Socransky collection and maintained in lab c |
| Geo Location | Japan: Okayama |
