Genome Meta Information: Lautropia dentalis KCOM 2505 (GCA_003892345.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003892345.1 | ||
| HOMD Taxon-ID | HMT-0409 | ||
| Species Name (in use by HOMD) | Lautropia dentalis | ||
| Organism Name (as deposited) | HMT-409 Lautropia dentalis KCOM 2505 | ||
| Strain or Isolate | KCOM 2505 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Lautropia; s__Lautropia dentalis |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 377.9 | ||
| Contigs |
|
||
| Total Sequence Length | 3,827,229 (bp) | ||
| GC Percentage | 65.12 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/892/345/GCA_003892345.1_ASM389234v1 | ||
| CDS | 2982 | ||
| Genes | 3069 | ||
| mRNA | 3069 | ||
| misc RNA | 25 | ||
| rRNA | 5 | ||
| tRNA | 56 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 86.31 % | ||
| CheckM Contamination | 0.94 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM389234v1 |
| GenBank Assembly Accession | GCA_003892345.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003892345.1 [NCBI] |
| BioSample | SAMN10461999 [NCBI] |
| BioProject | PRJNA506520 [NCBI] |
| Submitter | Korean Collection for Oral Microbiology |
| Submission Date | 2018-11-22T03:02:17.150 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | RRUE01 |
| NCBI TaxID | 2490857 |
| Isolation Source | Subgingival dental plaque |
| Geo Location | South Korea: Gwangju |
