Genome Meta Information: Parvimonas micra FDAARGOS_569 (GCA_003938725.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003938725.1 | ||
| HOMD Taxon-ID | HMT-0111 | ||
| Species Name (in use by HOMD) | Parvimonas micra | ||
| Organism Name (as deposited) | HMT-111 Parvimonas micra FDAARGOS_569 | ||
| Strain or Isolate | FDAARGOS_569 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Parvimonas; s__Parvimonas micra |
||
| Sequencing Technology | PacBio; Illumina | ||
| Genome Coverage | 2122 | ||
| Contigs |
|
||
| Total Sequence Length | 1,715,975 (bp) | ||
| GC Percentage | 28.53 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/938/725/GCA_003938725.1_ASM393872v1 | ||
| CDS | 1595 | ||
| Genes | 1687 | ||
| mRNA | 1687 | ||
| misc RNA | 38 | ||
| rRNA | 11 | ||
| tRNA | 42 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 100 % | ||
| CheckM Contamination | 0.86 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM393872v1 |
| GenBank Assembly Accession | GCA_003938725.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003938725.1 [NCBI] |
| BioSample | SAMN10163193 [NCBI] |
| BioProject | PRJNA231221 [NCBI] |
| Submitter | US Food and Drug Administration |
| Submission Date | 2018-10-02T12:23:09.940 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | RKIS01 |
| NCBI TaxID | 33033 |
| Isolation Source | clinical isolate |
| Geo Location | Unknown |
