Genome Meta Information: Pseudomonas aeruginosa B17932 (GCA_003952325.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_003952325.1 | ||
| HOMD Taxon-ID | HMT-0536 | ||
| Species Name (in use by HOMD) | Pseudomonas aeruginosa | ||
| Organism Name (as deposited) | HMT-536 Pseudomonas aeruginosa B17932 | ||
| Strain or Isolate | B17932 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas; s__Pseudomonas aeruginosa |
||
| Sequencing Technology | Oxford Nanopore MiniION; IonTorrent | ||
| Genome Coverage | 283 | ||
| Contigs |
|
||
| Total Sequence Length | 6,744,658 (bp) | ||
| GC Percentage | 65.94 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/952/325/GCA_003952325.1_ASM395232v1 | ||
| CDS | 6198 | ||
| Genes | 6413 | ||
| mRNA | 6413 | ||
| misc RNA | 129 | ||
| rRNA | 12 | ||
| tRNA | 73 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.9 % | ||
| CheckM Completeness | 94.62 % | ||
| CheckM Contamination | 1.69 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM395232v1 |
| GenBank Assembly Accession | GCA_003952325.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_003952325.1 [NCBI] |
| BioSample | SAMN10579150 [NCBI] |
| BioProject | PRJNA509363 [NCBI] |
| Submitter | Christian Medical College |
| Submission Date | 2018-12-11T08:34:05.060 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 287 |
| Isolation Source | blood |
| Geo Location | India |
